Constructor
| biograph | Missing |
| clustergram | Missing |
| geneont | Missing |
| phytree | Missing |
Data Formats and Databases
| affyprobeseqread | Missing |
| affyread | Missing |
| agferead | Missing |
| blastformat | Missing |
| blastread | Missing |
| blastreadlocal | Missing |
| celintensityread | Missing |
| cytobandread | Missing |
| emblread | Missing |
| fastaread | Missing |
| fastawrite | Missing |
| galread | Missing |
| genbankread | Missing |
| genpeptread | Missing |
| geosoftread | Missing |
| getblast | Missing |
| getembl | Missing |
| getgenbank | Missing |
| getgenpept | Missing |
| getgeodata | Missing |
| gethmmalignment | Missing |
| gethmmprof | Missing |
| gethmmtree | Missing |
| getpdb | Missing |
| gprread | Missing |
| ilmnbsread | Missing |
| imageneread | Missing |
| jcampread | Missing |
| multialignread | Missing |
| mzxmlread | Missing |
| pdbread | Missing |
| pdbwrite | Missing |
| pfamhmmread | Missing |
| phytreeread | Missing |
| phytreewrite | Missing |
| scfread | Missing |
| sptread | Missing |
Trace Tools
| scfread | Missing |
| traceplot | Missing |
Sequence Conversion
| aa2int | Missing |
| aa2nt | Missing |
| aminolookup | Missing |
| baselookup | Missing |
| dna2rna | Missing |
| int2aa | Missing |
| int2nt | Missing |
| nt2aa | Missing |
| nt2int | Missing |
| rna2dna | Missing |
| rnaconvert | Missing |
| seq2regexp | Missing |
| seqcomplement | Missing |
| seqrcomplement | Missing |
| seqreverse | Missing |
Sequence Utilities
| aminolookup | Missing |
| baselookup | Missing |
| blastlocal | Missing |
| blastncbi | Missing |
| cleave | Missing |
| featuresparse | Missing |
| geneticcode | Missing |
| joinseq | Missing |
| oligoprop | Missing |
| palindromes | Missing |
| pdbdistplot | Missing |
| proteinplot | Missing |
| proteinpropplot | Missing |
| ramachandran | Missing |
| randseq | Missing |
| rebasecuts | Missing |
| restrict | Missing |
| revgeneticcode | Missing |
| rnafold | Missing |
| seqconsensus | Missing |
| seqdisp | Missing |
| seqinsertgaps | Missing |
| seqlogo | Missing |
| seqmatch | Missing |
| seqprofile | Missing |
| seqshoworfs | Missing |
Sequence Statistics
| aacount | Missing |
| aminolookup | Missing |
| basecount | Missing |
| baselookup | Missing |
| codonbias | Missing |
| codoncount | Missing |
| cpgisland | Missing |
| dimercount | Missing |
| isoelectric | Missing |
| molweight | Missing |
| nmercount | Missing |
| ntdensity | Missing |
| seqshowwords | Missing |
| seqwordcount | Missing |
Sequence Visualization
| featuresmap | Missing |
| rnaplot | Missing |
| seqtool | Missing |
Pairwise Sequence Alignment
| fastaread | Missing |
| nwalign | Missing |
| seqdotplot | Missing |
| showalignment | Missing |
| swalign | Missing |
Multiple Sequence Alignment
| fastaread | Missing |
| multialign | Missing |
| multialignread | Missing |
| multialignviewer | Missing |
| profalign | Missing |
| seqpdist | Missing |
| showalignment | Missing |
Scoring Matrices
| blosum | Missing |
| dayhoff | Missing |
| gonnet | Missing |
| nuc44 | Missing |
| pam | Missing |
| dnds | Missing |
| dndsml | Missing |
| gethmmtree | Missing |
| phytreeread | Missing |
| phytreetool | Missing |
| phytreewrite | Missing |
| seqinsertgaps | Missing |
| seqlinkage | Missing |
| seqneighjoin | Missing |
| seqpdist | Missing |
| graphallshortestpaths | Missing |
| graphcluster | Missing |
| graphconncomp | Missing |
| graphisdag | Missing |
| graphisomorphism | Missing |
| graphisspantree | Missing |
| graphmaxflow | Missing |
| graphminspantree | Missing |
| graphpred2path | Missing |
| graphshortestpath | Missing |
| graphtopoorder | Missing |
| graphtraverse | Missing |
Gene Ontology
| goannotread | Missing |
| num2goid | Missing |
Protein Analysis
| aacount | Missing |
| aminolookup | Missing |
| atomiccomp | Missing |
| cleave | Missing |
| evalrasmolscript | Missing |
| isoelectric | Missing |
| molviewer | Missing |
| molweight | Missing |
| pdbdistplot | Missing |
| proteinplot | Missing |
| proteinpropplot | Missing |
| ramachandran | Missing |
Profile Hidden Markov Models
| gethmmalignment | Missing |
| gethmmprof | Missing |
| gethmmtree | Missing |
| hmmprofalign | Missing |
| hmmprofestimate | Missing |
| hmmprofgenerate | Missing |
| hmmprofmerge | Missing |
| hmmprofstruct | Missing |
| pfamhmmread | Missing |
| showhmmprof | Missing |
Microarray File Formats
| affyprobeseqread | Missing |
| affyread | Missing |
| agferead | Missing |
| celintensityread | Missing |
| galread | Missing |
| geosoftread | Missing |
| getgeodata | Missing |
| gprread | Missing |
| ilmnbsread | Missing |
| imageneread | Missing |
| sptread | Missing |
Microarray Utility
| affysnpquartets | Missing |
| ilmnbslookup | Missing |
| magetfield | Missing |
| probelibraryinfo | Missing |
| probesetlink | Missing |
| probesetlookup | Missing |
| probesetplot | Missing |
| probesetvalues | Missing |
Microarray Data Analysis and Visualization
| cghcbs | Missing |
| cghfreqplot | Missing |
| chromosomeplot | Missing |
| clustergram | Missing |
| maboxplot | Missing |
| mafdr | Missing |
| maimage | Missing |
| mairplot | Missing |
| maloglog | Missing |
| mapcaplot | Missing |
| mattest | Missing |
| mavolcanoplot | Missing |
| redbluecmap | Missing |
| redgreencmap | Missing |
Microarray Normalization and Filtering
| affyinvarsetnorm | Missing |
| affyprobeaffinities | Missing |
| exprprofrange | Missing |
| exprprofvar | Missing |
| gcrma | Missing |
| gcrmabackadj | Missing |
| geneentropyfilter | Missing |
| genelowvalfilter | Missing |
| generangefilter | Missing |
| genevarfilter | Missing |
| mainvarsetnorm | Missing |
| malowess | Missing |
| manorm | Missing |
| quantilenorm | Missing |
| rmabackadj | Missing |
| rmasummary | Missing |
| zonebackadj | Missing |
Statistical Learning
| classperf | Missing |
| crossvalind | Missing |
| knnclassify | Missing |
| knnimpute | Missing |
| optimalleaforder | Missing |
| randfeatures | Missing |
| rankfeatures | Missing |
| samplealign | Missing |
| svmclassify | Missing |
| svmsmoset | Missing |
| svmtrain | Missing |
Mass Spectrometry File Formats, Preprocessing, and Visualization
| jcampread | Missing |
| msalign | Missing |
| msbackadj | Missing |
| msdotplot | Missing |
| msheatmap | Missing |
| mslowess | Missing |
| msnorm | Missing |
| mspalign | Missing |
| mspeaks | Missing |
| msppresample | Missing |
| msresample | Missing |
| mssgolay | Missing |
| msviewer | Missing |
| mzxml2peaks | Missing |
| mzxmlread | Missing |
| samplealign | Missing |